#!/bin/tcsh


if ( ! $?JOB_ID ) setenv JOB_ID 1234
setenv JOB_ID `basename $JOB_ID .farmpbs.jlab.org`

set workroot=/work/halld/home/davidl/2009.08.07.track_resolutions
source ${workroot}/setenv.csh
set workdisk=${workroot}/set1_proton
set bindir=${workroot}/bin/Linux_Fedora8-i686-gcc4.1.2
set libdir=${workroot}/lib/Linux_Fedora8-i686-gcc4.1.2

mkdir -p $workdisk

env > $workdisk/env.${JOB_ID}

mkdir tmp${JOB_ID}
cd tmp${JOB_ID}

####################### Run hdgeant ##########################
# Run hdgeant
rm -f control.in
cat ${workroot}/farm/control.in.proton | sed -e s/XXX/${JOB_ID}/g > ${workdisk}/control.in.${JOB_ID}
ln -s ${workdisk}/control.in.${JOB_ID} control.in

echo "hdgeant output redirected to log file: ${workdisk}/hdgeant_${JOB_ID}.log"
${bindir}/hdgeant >& ${workdisk}/hdgeant_${JOB_ID}.log

# Smear drift chamber hits 
${bindir}/mcsmear -n hdgeant*.hddm

# copy output file to work disk
cp hdgeant*smeared.hddm $workdisk


####################### ALT1 no truth ########################
# Run hd_root without truth information
echo "hd_root output redirected to log file: ${workdisk}/ALT1_proton_no_truth${JOB_ID}.log"
${bindir}/hd_root --nthreads=1 --config=${workroot}/farm/ALT1_proton_no_truth.conf hdgeant*smeared.hddm -o ALT1_proton_no_truth${JOB_ID}.root >& ${workdisk}/ALT1_proton_no_truth${JOB_ID}.log
cp ALT1_proton_no_truth${JOB_ID}.root $workdisk

####################### ALT1 with truth ########################
# Run hd_root with truth information
echo "hd_root output redirected to log file: ${workdisk}/ALT1_proton_with_truth${JOB_ID}.log"
${bindir}/hd_root --nthreads=1 --config=${workroot}/farm/ALT1_proton_with_truth.conf hdgeant*smeared.hddm -o ALT1_proton_with_truth${JOB_ID}.root >& ${workdisk}/ALT1_proton_with_truth${JOB_ID}.log
cp ALT1_proton_with_truth${JOB_ID}.root $workdisk

####################### Kalman ########################
# Run hd_root with Kalman fitter
#echo "hd_root output redirected to log file: ${workdisk}/Kalman_proton${JOB_ID}.log"
#${bindir}/hd_root --nthreads=1 --config=${workroot}/farm/Kalman_proton.conf hdgeant*smeared.hddm -o Kalman_proton${JOB_ID}.root >& ${workdisk}/Kalman_proton${JOB_ID}.log
#cp Kalman_proton${JOB_ID}.root $workdisk